SMILE

Stochastic Models for the Inference of Life Evolution

Upcoming seminars

seminar

Statistical inference of growth and mutation patterns of tumors based on genomic data

Marek KIMMEL (Rice U)

February 6, 2020 at 10 - Collège de France (D2)


seminar

TBA

Donate WEGHORN (CRG Barcelona)

February 25, 2020 at 11:30 - Collège de France


seminar

TBA

Fernando CORDERO and Sebastian HUMMEL (Bielefeld U)

March 10, 2020 at 10 - Collège de France


seminar

TBA

Sylvain BILLIARD (U Lille)

March 17, 2020 at 10 - Collège de France


seminar

TBA

Thomas LENORMAND (CNRS et U Montpellier)

April 28, 2020 at 10 - Collège de France


seminar

TBA

Sarah PENNINGTON (U Bath)

June 2, 2020 at 10 - Collège de France


seminar

TBA

Bastien MALLEIN (U Sorbonne Paris Nord)

June 23, 2020 at 10 - Collège de France


2020

seminar

ABC phylodynamics

Samuel ALIZON (CNRS)

January 14, 2020 at 10 - Collège de France


2019

seminar

A brief checkup on the genome scan methods to detect local adaptation

Pierre de VILLEMEREUIL (EPHE)

December 17, 2019 at 10 - Collège de France


seminar

Household epidemic models and McKean-Vlasov Poisson driven SDEs

Raphaël FORIEN (INRA)

October 15, 2019 at 10 - Collège de France


seminar

The combinatorics of ‘capturing’ a phylogenetic tree from discrete characters

Mike STEEL (U Canterbury)

June 19, 2019 at 11 - Collège de France


seminar

The genealogy of a sample from a Galton-Watson tree

Samuel JOHNSTON (U College Dublin)

June 5, 2019 at 11 - Collège de France


seminar

Deciphering the temporal drivers of the incidence of diseases caused by human enteroviruses

Margarita PONS-SALORT (Imperial College)

March 20, 2019 at 11 - Collège de France (D2)


seminar

Hybridization fuels repeated adaptive radiations in cichlid fishes

Joana MEIER (Cambridge)

February 20, 2019 at 11 - Collège de France (D2)


2018

seminar

Genomes and metagenomes, as component systems

Marco COSENTINO LAGOMARSINO (CNRS-UPMC)

June 18, 2018 at 11 - Collège de France


seminar

How a well-adapting immune system remembers

Andreas MAYER (Princeton)

May 28, 2018 at 11 - Collège de France


seminar

Genetic architecture of traits under balancing selection: models and data

Violaine LLAURENS (MNHN)

April 9, 2018 at 11 - Collège de France


seminar

Development of metabolic-life history models to infer ecological and social drivers of brain-size evolution

Mauricio GONZALEZ FORERO (U St Andrews)

March 26, 2018 at 11 - Collège de France


seminar

The breakdown of genomic ancestry bocks in hybrid lineages given a finite number of recombination sites

Thijs JANZEN (Carl von Ossietzky Universität)

March 14, 2018 at 14 - Collège de France


seminar

Dynamic networks of animal trade as underlying structure for infection disease spread: data analysis and modelling

Elisabeta VERGU (INRA)

March 12, 2018 at 11 - Collège de France


seminar

Canalization and genetic assimilation. Reassessing the radicality of the Waddingtonian concept of inheritance of acquired characters

Laurent LOISON (IHPST)

March 5, 2018 at 12 - Collège de France


seminar

Divergent evolution and the challenges for alpha taxonomy: the case of Amazonian group Synallaxis rutilans (Aves: Furnariidae)

Renata STOPIGLIA (MNHN)

February 12, 2018 at 11 - Collège de France


seminar

Life-history strategies can affect the genetic evolution of populations

Diala ABU AWAD

January 29, 2018 at 11 - Collège de France


seminar

Population subdivision and evolution on rugged fitness landscapes

Anne-Florence BITBOL (CNRS)

January 22, 2018 at 11 - Collège de France


journal club

The dynamics of molecular evolution over 60,000 generations by Good et al (2017)

François BLANQUART (CNRS)

January 15, 2018 at 11 - Collège de France


2017

seminar

A PDE model to analyse the effect of climate change on a population

Gael Raoul (CNRS)

December 11, 2017 at 11 - Collège de France


journal club

after Billera et al.: Geometry of the Space of Phylogenetic Trees

Jean-Jil Duchamps (SMILE)

November 27, 2017 at 11 - Collège de France


seminar

Phenotypic plasticity in the context of physiologically structured population

Louise LASSALLE (U Amsterdam)

November 20, 2017 at 11 - Collège de France


seminar

Evolutionary time drives global tetrapod diversity

Julie MARIN (SMILE)

November 13, 2017 at 11 - Collège de France


seminar

Séminaire EvoCIRB

Camille CURANTZ

November 6, 2017 at 11 - Collège de France


seminar

The discrete ancestral selection graph

Adrián GONZALEZ CASANOVA (Weierstraß-Institut, Berlin)

October 23, 2017 at 11 - Collège de France


seminar

Régénérations de permutations échangeables

Jean-Jil DUCHAMPS

October 16, 2017 at 11 - Collège de France


seminar

Séminaire EvoCIRB

Dany CHAUVIN

October 2, 2017 at 12 - Collège de France


seminar

Soutenance de Thèse

Marguerite LAPIERRE

September 25, 2017 at 14 - Collège de France


seminar

Réunion d'équipe

Pascal CAMPAGNE et Thomas GARCIA

September 18, 2017 at 11 - Collège de France


seminar

Collective disease defences in ant societies, followed by: Fitness effect of mutations between phases of the life cycle of the root-rot fungus Heterobasidion parviporum

Line UGELVIG (U Copenhage), followed by Nicolas RODE (INRA)

June 27, 2017 at 10 - Collège de France


seminar

Des renouvellements bidimensionnels pour modéliser l’ADN: phénomènes de dénaturation et de condensation

Quentin BERGER (LPMA)

June 20, 2017 at 10 - Collège de France


seminar

Some predictable quantities of neutral evolution: (i) Hamming distance between individuals and (ii) variance of dispersion number

Bahram HOUCHMANDZADEH (U Grenoble)

May 30, 2017 at 10 - Collège de France


seminar

Invasions, heterogeneity, and the evolution of dispersal

Stephen CORNELL (Liverpool)

May 16, 2017 at 10 - Collège de France


journal club

Inferring recent demography from from isolation by distance of long shared sequence blocks - Ringbauer et al. 2017

Veronica MIRO PINA (SMILE)

May 2, 2017 at 10 - Collège de France


seminar

Joint SMILE - SBG meeting

April 25, 2017 at 11 - UPMC, Campus jussieu


seminar

Viral phylodynamics using ABC approaches

Emma SAULNIER (IRD)

April 18, 2017 at 10 - Collège de France


seminar

Lab meeting

François BIENVENU (SMILE)

March 28, 2017 at 10 - Collège de France


seminar

Joint SMILE-SBG meeting

March 21, 2017 at 11 - UPMC, Campus Jussieu


seminar

The importance of random events in the diversification of life

Julie MARIN (MNHN)

March 14, 2017 at 10 - Collège de France


seminar

Lab meeting

Marguerite LAPIERRE (SMILE)

March 7, 2017 at 10 - Collège de France


seminar

Space and speciation: understanding the interplay between geography and genotype

Ayana MARTINS (University of Campinas)

February 28, 2017 at 10 - Collège de France


journal club


seminar

Tour de table

Tout Le Monde (SMILE)

February 7, 2017 at 10 - Collège de France


seminar

Lab meeting: Partitions du plan aléatoires et coalescence

Jean-Jil DUCHAMPS (SMILE)

January 31, 2017 at 10 - Collège de France


seminar

Lab meeting: Modèles de gene drive et gene brake

Thomas GARCIA (SMILE)

January 24, 2017 at 10 - Collège de France


seminar

Some misleading interpretations of inferred demographic histories: the effects of population structure

Willy RODRIGUEZ (GQE – Le Moulon)

January 17, 2017 at 10 - Collège de France


2016

seminar

Lab meeting

Miraine DAVILA FELIPE (SMILE)

December 13, 2016 at 10 - Collège de France


seminar


seminar

Genetic signatures of evolutionary rescue with sex

Matthew OSMOND (UBC)

November 29, 2016 at 10 - Collège de France


seminar

Crossing the species barrier: is interspecies gene flow adaptive?

Nicolas BIERNE (U Montpellier & CNRS)

November 22, 2016 at 10 - Collège de France


seminar

Detecting past contraction in population size using haplotype homozygosity

Coralie MERLE (U Montpellier & INRA)

November 15, 2016 at 10 - Collège de France


seminar

Genetics and evolution of a morphological change linked to speciation in the D. melanogaster subgroup

Alexandre PELUFFO (IJM)

October 25, 2016 at 10 - Collège de France


seminar

Time reversibility and other comparisons between mechanics and population genetics

Maël MONTEVIL (U Paris-Diderot)

October 18, 2016 at 10 - Collège de France


seminar

Evolution of molecular phenotypes: from gene regulation to immune system

Armita NOURMOHAMMAD (Princeton)

October 4, 2016 at 10 - Collège de France


seminar

A theoretical view on the epidemiology and evolution of multiple infections

Mircea SOFONEA (MIVEGEC Montpellier)

September 20, 2016 at 10 - Collège de France


seminar

Couplage biomécanique entre la différenciation et la morphogenèse lors du développement embryonnaire des amniotes

Vincent FLEURY (MSC, U Paris Diderot)

June 28, 2016 at 10 - Collège de France


seminar

Explaining the past, predicting the future: two contributions from the mathematical modelling of Ebola outbreaks

Anton CAMACHO (London School of Hygiene and Tropical Medicine)

June 21, 2016 at 10 - Collège de France


seminar

Faut-il relâcher le 'gene drive' dans la nature ?

Virginie ORGOGOZO (IJM) and Baptiste MORIZOT (AMU)

June 7, 2016 at 10 - Collège de France


seminar

Metastability transition in genome evolution and population structure of bacterial species

Purushottam DIXIT (Columbia U)

June 3, 2016 at 9:30 - Collège de France


seminar

Front propagation in the Fisher-KPP equation: recent progress

Julien BERESTYCKI (Oxford and LPMA)

April 12, 2016 at 9:30 - Collège de France


seminar

Adaptive dynamics in complex ecological systems: pathogen evolution in a structured canopy model

David CLAESSEN (ENS)

April 5, 2016 at 10 - Collège de France


seminar

Evolution parallèle et adaptation rapide chez la phalène du bouleau

Pascal CAMPAGNE (U Liverpool)

March 29, 2016 at 10 - Collège de France


seminar

Genealogical trees and two-sex populations

Amandine VEBER (CMAP)

March 15, 2016 at 10 - Collège de France


journal club

Probabilistic models of eukaryotic evolution: time for integration - after Lartillot (2015)

Veronica MIRO PINA (LPMA & SMILE)

February 16, 2016 at 10 - Collège de France


seminar

Distribution of lengths of IBD blocks on the genome

Mathieu TIRET (INRA)

February 9, 2016 at 10:30 - Collège de France


seminar

Explaining the global bird migration system from first principles using a process-based model

Marius SOMVEILLE (Oxford and Cambridge)

February 2, 2016 at 10 - Collège de France


seminar

Quiescence: the other mutational landscape

Benoît ARCANGIOLI (Institut Pasteur)

January 26, 2016 at 10 - Collège de France


journal club

Unoriented first-passage percolation on the n-cube - after Martinsson (2014) arXiv

François BIENVENU (SMILE)

January 19, 2016 at 10 - Collège de France


seminar

Mathematical models of local adaptation

Florence DEBARRE (CNRS & SMILE)

January 12, 2016 at 10 - Collège de France


2015

seminar

Théorème fondamental de la sélection naturelle, sa signification et son extension

Sabin LESSARD (U Montréal)

December 8, 2015 at 10 - Collège de France


seminar

Statistical challenges when analysing emerging epidemic outbreaks

Tom BRITTON (Stockholm U)

December 4, 2015 at 11 - Collège de France, Room D2


seminar

Double échelle de temps dans des populations subdivisées : effets sur le déséquilibre de liaison et l'évolution de la coopération

Sabin LESSARD (U Montréal)

December 1, 2015 at 10 - Collège de France


seminar


seminar

Le coalescent de Kingman, la formule échantillonnale d'Ewens et la loi d'évolution du tiers

Sabin LESSARD (U Montréal)

November 17, 2015 at 10 - Collège de France


seminar

Ray-Knight representation of flows of branching processes with competition by pruning of Lévy trees

Maria Clara FITTIPALDI (U Buenos Aires)

November 10, 2015 at 10 - Collège de France


seminar

Phase transitions in some stochastic toy-models

Pablo MARTIN RODRIGUEZ (U. Sao Paulo & LPMA)

October 13, 2015 at 10h - Collège de France


seminar

Master defense: the Erdös-Renyi random graph

François BIENVENU (SMILE)

September 22, 2015 at 10 - Collège de France


seminar

How does pollen dispersal affect species range shift and adaptation under climate change?

Robin AGUILEE (U Paul Sabatier)

September 8, 2015 at 10 - Collège de France


seminar

Detection of outliers with factor models and PCA: Application to whole genome scans for selection

Michael BLUM (IMAG & CNRS)

June 9, 2015 at 10h - Collège de France


journal club

Predicting evolution from the shape of genealogical trees - after Neher et al (2014) eLife

Todd PARSONS (SMILE-PSB)

June 2, 2015 at 14h30 - Université Pierre et Marie Curie


seminar

Délimitation d'espèces: l'expérience d'un naturaliste

Nicolas PUILLANDRE (MNHN)

May 19, 2015 at 10 - Collège de France


seminar

Inbreeding and admixture inferred from high coverage genomes of Neandertal and Denisovan individuals

Flora JAY (MNHN)

May 12, 2015 at 10h - Collège de France


journal club

Delimiting species using single-locus data... - after Fujisawa & Barraclough (2013) Syst. Biol.

Marc MANCEAU (SMILE)

May 5, 2015 at 14h30 - Université Pierre et Marie Curie


seminar

Statistical laws in genomes - what do they tell us?

Ivan JUNIER (UJF)

April 14, 2015 at 10 - Collège de France


seminar

Are experimental fitness landscapes compatible with Fisher's geometric model?

François BLANQUART (Imperial College)

March 24, 2015 at 10 - Collège de France


seminar

Retournement temporel dans les modèles matriciels de population

François BIENVENU (SMILE)

March 17, 2015 at 10 - Collège de France


journal club


seminar

The distribution of quasi-species

Joseba Dalmau (ENS)

February 10, 2015 at 10 - Collège de France


journal club

Equilibrium speciation dynamics in a model adaptive radiation of island lizards - after Rabosky & Glor (2010) PNAS

Fanny GASCUEL (SMILE)

February 3, 2015 at 10 - Université Pierre & Marie Curie


seminar

Heredity in evolution and evolution of heredity

Olivier RIVOIRE (UJF)

January 27, 2015 at 10 - Collège de France


seminar

Reference models in molecular evolution

Marguerite LAPIERRE (ABI & SMILE)

January 20, 2015 at 10 - Collège de France


seminar

Multiple merger coalescents: Why and what for?

Christophe LEMAIRE (U Angers)

January 13, 2015 at 10 - Collège de France


2012

seminar

Bioinformed design: can we design the microbial ecosystems in our cities to create a healthier, more sustainable world?

Jessica GREEN (U. Oregon)

November 27, 2012 at 10 - Collège de France


seminar

The effects of archipelago spatial structure on the biodiversity patterns predicted by neutral models

Fanny Gascuel (ENS, SMILE)

November 20, 2012 at 10 - Collège de France


seminar

The conventional wisdom redux? Stochastic evolution in multi-strain epidemics

Todd Parsons (SMILE)

November 13, 2012 at 10 - Collège de France


seminar

Branching processes with advantageous mutations

Patrick Hoscheit (SMILE)

October 16, 2012 at 10 - Collège de France


seminar

A microscopic model of species diversification

Marc Manceau (SMILE)

October 10, 2012 at 10 - Collège de France


seminar

Modèles de spéciation/extinction et registre fossile

Gilles Didier (Inst. Math. Luminy)

June 26, 2012 at 10 - Collège de France


seminar

Reconstructing pedigrees using SSR and ISSR data

Richard Pymar (U. Angers)

June 26, 2012 at 10 - Collège de France


seminar

Une nouvelle méthode pour détecter et mesurer la sélection dans les données de polymorphisme génétique

Renaud Vitalis (INRA Montpellier)

June 22, 2012 at 10 - Collège de France


seminar

The infinitely many genes model and the evolution of bacterial genomes under horizontal gene transfer

Franz Baumdicker (U. Freiburg)

June 5, 2012 at 10 - Collège de France


seminar

Théorèmes limites pour un processus de diversification dépendant de son passé

Viet Chi Tran (U. Lille 1)

May 29, 2012 at 10 - Collège de France


seminar

Evolution de séquences d'ADN et systèmes de particules en interaction

Mikael Falconnet (U. Evry)

May 15, 2012 at 10 - Collège de France


seminar

Délimitation d’espèce dans l'inconnu: concepts, méthodes et outils

Nicolas Puillandre (MNHN)

April 10, 2012 at 10 - Collège de France


seminar

Models of adaptive speciation

Michael Kopp (U. Marseille)

March 27, 2012 at 10 - Collège de France


seminar

Transition des systèmes de reproduction chez les plantes, les animaux, les champignons… Quelle histoire (!) ?

Sylvain Billiard (U. Lille 1)

March 20, 2012 at 10 - Collège de France


seminar

Processus de vie et de mort avec mutations à la naissance ou au cours de la vie

Mathieu Richard (UPMC)

March 13, 2012 at 10 - Collège de France


seminar

Approche EDP en dynamique adaptative : concentration et branchement evolutif dans un modele avec plusieurs ressources

Nicolas Champagnat (INRIA Nancy)

March 6, 2012 at 10 - Collège de France


seminar

Bayesian integrative models for molecular and macro-evolutionary studies

Nicolas Lartillot (Montréal)

February 28, 2012 at 10 - Collège de France


seminar

What growth models, tree shape and macroevolution have in common ?

Stephanie Keller-Schmidt (U. Leipzig)

February 21, 2012 at 10 - Collège de France


seminar

Recombinaison à taux dépendant de la divergence entre espèces bactériennes: modèle et statistiques résumées

Pierre Nicolas (INRA)

February 14, 2012 at 10 - Collège de France


seminar

Inferring epidemiological dynamics based on viral sequence data

Tanja Stadler (ETH Zürich)

February 7, 2012 at 10 - Collège de France


seminar

Diversité génétique et mosaïcisme: apport des méthodes de réseau

Philippe Lopez (UPMC)

January 24, 2012 at 10 - Collège de France


seminar

Recherche de motifs de mutations successives répétés au cours de l'évolution

Kader Behdenna (Smile)

January 17, 2012 at 10 - Collège de France


2011

seminar

Adaptive dynamics and macroevolution

Régis FERRIERE (ENS)

December 13, 2011 at 10 - Collège de France


journal club

Joint evolution of substitution rates and continuous phenotypic characters - after Lartillot & Poujol (2010)

Avner BAR-HEN & Mahendra MARIADASSOU (SMILE & INRA)

November 29, 2011 at 10h - Collège de France


seminar

Impact of demographic, cultural and selective processes on genetic diversity: a modelling approach

Frédéric AUSTERLITZ (CNRS)

November 22, 2011 at 10 - Collège de France


journal club

Phylodynamics - after Koelle et al (2010) and Rasmussen et al (2011)

Bernard CAZELLES (UPMC)

November 15, 2011 at 10h - Collège de France


seminar


seminar

Mais au fond qu'est-ce-qu'un test de neutralité ?

Guillaume ACHAZ (UPMC & SMILE)

November 8, 2011 at 10 - Collège de France


seminar

The state of the infection at the time of first detection

Amaury LAMBERT (LPMA & SMILE)

November 8, 2011 - Institut Pasteur


seminar

Phylogenetic comparative analysis: a modelling approach

Aaron KING (U. Michigan)

November 4, 2011 at 10 - Collège de France


seminar

Généalogie du brownien branchant avec sélection

Julien BERESTYCKI (LPMA)

November 3, 2011 at 10 - UPMC


seminar

Probabilistic models of phylogenetic trees

Amaury LAMBERT (LPMA & SMILE)

October 18, 2011 at 10 - Collège de France


seminar

ABGD: Automatic Barcode Gap Discovery

Amaury LAMBERT (LPMA & SMILE)

October 11, 2011 at 10 - Collège de France


1970

seminar

MCEB 2019 - Mathematical and Computational Evolutionary Biology

Prenom Nom (affiliation)

- Porquerolles island