SMILE

Stochastic Models for the Inference of Life Evolution

2019

seminar

Household epidemic models and McKean-Vlasov Poisson driven SDEs

Raphaël FORIEN (INRA)

October 15, 2019 at 10 - Collège de France


seminar

The combinatorics of ‘capturing’ a phylogenetic tree from discrete characters

Mike STEEL (U Canterbury)

June 19, 2019 at 11 - Collège de France


seminar

The genealogy of a sample from a Galton-Watson tree

Samuel JOHNSTON (U College Dublin)

June 5, 2019 at 11 - Collège de France


seminar

Deciphering the temporal drivers of the incidence of diseases caused by human enteroviruses

Margarita PONS-SALORT (Imperial College)

March 20, 2019 at 11 - Collège de France (D2)


seminar

Hybridization fuels repeated adaptive radiations in cichlid fishes

Joana MEIER (Cambridge)

February 20, 2019 at 11 - Collège de France (D2)


2018

seminar

Genomes and metagenomes, as component systems

Marco COSENTINO LAGOMARSINO (CNRS-UPMC)

June 18, 2018 at 11 - Collège de France


seminar

How a well-adapting immune system remembers

Andreas MAYER (Princeton)

May 28, 2018 at 11 - Collège de France


seminar

Genetic architecture of traits under balancing selection: models and data

Violaine LLAURENS (MNHN)

April 9, 2018 at 11 - Collège de France


seminar

Development of metabolic-life history models to infer ecological and social drivers of brain-size evolution

Mauricio GONZALEZ FORERO (U St Andrews)

March 26, 2018 at 11 - Collège de France


seminar

The breakdown of genomic ancestry bocks in hybrid lineages given a finite number of recombination sites

Thijs JANZEN (Carl von Ossietzky Universität)

March 14, 2018 at 14 - Collège de France


seminar

Dynamic networks of animal trade as underlying structure for infection disease spread: data analysis and modelling

Elisabeta VERGU (INRA)

March 12, 2018 at 11 - Collège de France


seminar

Canalization and genetic assimilation. Reassessing the radicality of the Waddingtonian concept of inheritance of acquired characters

Laurent LOISON (IHPST)

March 5, 2018 at 12 - Collège de France


seminar

Divergent evolution and the challenges for alpha taxonomy: the case of Amazonian group Synallaxis rutilans (Aves: Furnariidae)

Renata STOPIGLIA (MNHN)

February 12, 2018 at 11 - Collège de France


seminar

Life-history strategies can affect the genetic evolution of populations

Diala ABU AWAD

January 29, 2018 at 11 - Collège de France


seminar

Population subdivision and evolution on rugged fitness landscapes

Anne-Florence BITBOL (CNRS)

January 22, 2018 at 11 - Collège de France


journal club

The dynamics of molecular evolution over 60,000 generations by Good et al (2017)

François BLANQUART (CNRS)

January 15, 2018 at 11 - Collège de France


2017

seminar

A PDE model to analyse the effect of climate change on a population

Gael Raoul (CNRS)

December 11, 2017 at 11 - Collège de France


journal club

after Billera et al.: Geometry of the Space of Phylogenetic Trees

Jean-Jil Duchamps (SMILE)

November 27, 2017 at 11 - Collège de France


seminar

Phenotypic plasticity in the context of physiologically structured population

Louise LASSALLE (U Amsterdam)

November 20, 2017 at 11 - Collège de France


seminar

Evolutionary time drives global tetrapod diversity

Julie MARIN (SMILE)

November 13, 2017 at 11 - Collège de France


seminar

Séminaire EvoCIRB

Camille CURANTZ

November 6, 2017 at 11 - Collège de France


seminar

The discrete ancestral selection graph

Adrián GONZALEZ CASANOVA (Weierstraß-Institut, Berlin)

October 23, 2017 at 11 - Collège de France


seminar

Régénérations de permutations échangeables

Jean-Jil DUCHAMPS

October 16, 2017 at 11 - Collège de France


seminar

Séminaire EvoCIRB

Dany CHAUVIN

October 2, 2017 at 12 - Collège de France


seminar

Soutenance de Thèse

Marguerite LAPIERRE

September 25, 2017 at 14 - Collège de France


seminar

Réunion d'équipe

Pascal CAMPAGNE et Thomas GARCIA

September 18, 2017 at 11 - Collège de France


seminar

Collective disease defences in ant societies, followed by: Fitness effect of mutations between phases of the life cycle of the root-rot fungus Heterobasidion parviporum

Line UGELVIG (U Copenhage), followed by Nicolas RODE (INRA)

June 27, 2017 at 10 - Collège de France


seminar

Des renouvellements bidimensionnels pour modéliser l’ADN: phénomènes de dénaturation et de condensation

Quentin BERGER (LPMA)

June 20, 2017 at 10 - Collège de France


seminar

Some predictable quantities of neutral evolution: (i) Hamming distance between individuals and (ii) variance of dispersion number

Bahram HOUCHMANDZADEH (U Grenoble)

May 30, 2017 at 10 - Collège de France


seminar

Invasions, heterogeneity, and the evolution of dispersal

Stephen CORNELL (Liverpool)

May 16, 2017 at 10 - Collège de France


journal club

Inferring recent demography from from isolation by distance of long shared sequence blocks - Ringbauer et al. 2017

Veronica MIRO PINA (SMILE)

May 2, 2017 at 10 - Collège de France


seminar

Joint SMILE - SBG meeting

April 25, 2017 at 11 - UPMC, Campus jussieu


seminar

Viral phylodynamics using ABC approaches

Emma SAULNIER (IRD)

April 18, 2017 at 10 - Collège de France


seminar

Lab meeting

François BIENVENU (SMILE)

March 28, 2017 at 10 - Collège de France


seminar

Joint SMILE-SBG meeting

March 21, 2017 at 11 - UPMC, Campus Jussieu


seminar

The importance of random events in the diversification of life

Julie MARIN (MNHN)

March 14, 2017 at 10 - Collège de France


seminar

Lab meeting

Marguerite LAPIERRE (SMILE)

March 7, 2017 at 10 - Collège de France


seminar

Space and speciation: understanding the interplay between geography and genotype

Ayana MARTINS (University of Campinas)

February 28, 2017 at 10 - Collège de France


journal club


seminar

Tour de table

Tout Le Monde (SMILE)

February 7, 2017 at 10 - Collège de France


seminar

Lab meeting: Partitions du plan aléatoires et coalescence

Jean-Jil DUCHAMPS (SMILE)

January 31, 2017 at 10 - Collège de France


seminar

Lab meeting: Modèles de gene drive et gene brake

Thomas GARCIA (SMILE)

January 24, 2017 at 10 - Collège de France


seminar

Some misleading interpretations of inferred demographic histories: the effects of population structure

Willy RODRIGUEZ (GQE – Le Moulon)

January 17, 2017 at 10 - Collège de France


2016

seminar

Lab meeting

Miraine DAVILA FELIPE (SMILE)

December 13, 2016 at 10 - Collège de France


seminar


seminar

Genetic signatures of evolutionary rescue with sex

Matthew OSMOND (UBC)

November 29, 2016 at 10 - Collège de France


seminar

Crossing the species barrier: is interspecies gene flow adaptive?

Nicolas BIERNE (U Montpellier & CNRS)

November 22, 2016 at 10 - Collège de France


seminar

Detecting past contraction in population size using haplotype homozygosity

Coralie MERLE (U Montpellier & INRA)

November 15, 2016 at 10 - Collège de France


seminar

Genetics and evolution of a morphological change linked to speciation in the D. melanogaster subgroup

Alexandre PELUFFO (IJM)

October 25, 2016 at 10 - Collège de France


seminar

Time reversibility and other comparisons between mechanics and population genetics

Maël MONTEVIL (U Paris-Diderot)

October 18, 2016 at 10 - Collège de France


seminar

Evolution of molecular phenotypes: from gene regulation to immune system

Armita NOURMOHAMMAD (Princeton)

October 4, 2016 at 10 - Collège de France


seminar

A theoretical view on the epidemiology and evolution of multiple infections

Mircea SOFONEA (MIVEGEC Montpellier)

September 20, 2016 at 10 - Collège de France


seminar

Couplage biomécanique entre la différenciation et la morphogenèse lors du développement embryonnaire des amniotes

Vincent FLEURY (MSC, U Paris Diderot)

June 28, 2016 at 10 - Collège de France


seminar

Explaining the past, predicting the future: two contributions from the mathematical modelling of Ebola outbreaks

Anton CAMACHO (London School of Hygiene and Tropical Medicine)

June 21, 2016 at 10 - Collège de France


seminar

Faut-il relâcher le 'gene drive' dans la nature ?

Virginie ORGOGOZO (IJM) and Baptiste MORIZOT (AMU)

June 7, 2016 at 10 - Collège de France


seminar

Metastability transition in genome evolution and population structure of bacterial species

Purushottam DIXIT (Columbia U)

June 3, 2016 at 9:30 - Collège de France


seminar

Front propagation in the Fisher-KPP equation: recent progress

Julien BERESTYCKI (Oxford and LPMA)

April 12, 2016 at 9:30 - Collège de France


seminar

Adaptive dynamics in complex ecological systems: pathogen evolution in a structured canopy model

David CLAESSEN (ENS)

April 5, 2016 at 10 - Collège de France


seminar

Evolution parallèle et adaptation rapide chez la phalène du bouleau

Pascal CAMPAGNE (U Liverpool)

March 29, 2016 at 10 - Collège de France


seminar

Genealogical trees and two-sex populations

Amandine VEBER (CMAP)

March 15, 2016 at 10 - Collège de France


journal club

Probabilistic models of eukaryotic evolution: time for integration - after Lartillot (2015)

Veronica MIRO PINA (LPMA & SMILE)

February 16, 2016 at 10 - Collège de France


seminar

Distribution of lengths of IBD blocks on the genome

Mathieu TIRET (INRA)

February 9, 2016 at 10:30 - Collège de France


seminar

Explaining the global bird migration system from first principles using a process-based model

Marius SOMVEILLE (Oxford and Cambridge)

February 2, 2016 at 10 - Collège de France


seminar

Quiescence: the other mutational landscape

Benoît ARCANGIOLI (Institut Pasteur)

January 26, 2016 at 10 - Collège de France


journal club

Unoriented first-passage percolation on the n-cube - after Martinsson (2014) arXiv

François BIENVENU (SMILE)

January 19, 2016 at 10 - Collège de France


seminar

Mathematical models of local adaptation

Florence DEBARRE (CNRS & SMILE)

January 12, 2016 at 10 - Collège de France


2015

seminar

Théorème fondamental de la sélection naturelle, sa signification et son extension

Sabin LESSARD (U Montréal)

December 8, 2015 at 10 - Collège de France


seminar

Statistical challenges when analysing emerging epidemic outbreaks

Tom BRITTON (Stockholm U)

December 4, 2015 at 11 - Collège de France, Room D2


seminar

Double échelle de temps dans des populations subdivisées : effets sur le déséquilibre de liaison et l'évolution de la coopération

Sabin LESSARD (U Montréal)

December 1, 2015 at 10 - Collège de France


seminar


seminar

Le coalescent de Kingman, la formule échantillonnale d'Ewens et la loi d'évolution du tiers

Sabin LESSARD (U Montréal)

November 17, 2015 at 10 - Collège de France


seminar

Ray-Knight representation of flows of branching processes with competition by pruning of Lévy trees

Maria Clara FITTIPALDI (U Buenos Aires)

November 10, 2015 at 10 - Collège de France


seminar

Phase transitions in some stochastic toy-models

Pablo MARTIN RODRIGUEZ (U. Sao Paulo & LPMA)

October 13, 2015 at 10h - Collège de France


seminar

Master defense: the Erdös-Renyi random graph

François BIENVENU (SMILE)

September 22, 2015 at 10 - Collège de France


seminar

How does pollen dispersal affect species range shift and adaptation under climate change?

Robin AGUILEE (U Paul Sabatier)

September 8, 2015 at 10 - Collège de France


seminar

Detection of outliers with factor models and PCA: Application to whole genome scans for selection

Michael BLUM (IMAG & CNRS)

June 9, 2015 at 10h - Collège de France


journal club

Predicting evolution from the shape of genealogical trees - after Neher et al (2014) eLife

Todd PARSONS (SMILE-PSB)

June 2, 2015 at 14h30 - Université Pierre et Marie Curie


seminar

Délimitation d'espèces: l'expérience d'un naturaliste

Nicolas PUILLANDRE (MNHN)

May 19, 2015 at 10 - Collège de France


seminar

Inbreeding and admixture inferred from high coverage genomes of Neandertal and Denisovan individuals

Flora JAY (MNHN)

May 12, 2015 at 10h - Collège de France


journal club

Delimiting species using single-locus data... - after Fujisawa & Barraclough (2013) Syst. Biol.

Marc MANCEAU (SMILE)

May 5, 2015 at 14h30 - Université Pierre et Marie Curie


seminar

Statistical laws in genomes - what do they tell us?

Ivan JUNIER (UJF)

April 14, 2015 at 10 - Collège de France


seminar

Are experimental fitness landscapes compatible with Fisher's geometric model?

François BLANQUART (Imperial College)

March 24, 2015 at 10 - Collège de France


seminar

Retournement temporel dans les modèles matriciels de population

François BIENVENU (SMILE)

March 17, 2015 at 10 - Collège de France


journal club


seminar

The distribution of quasi-species

Joseba Dalmau (ENS)

February 10, 2015 at 10 - Collège de France


journal club

Equilibrium speciation dynamics in a model adaptive radiation of island lizards - after Rabosky & Glor (2010) PNAS

Fanny GASCUEL (SMILE)

February 3, 2015 at 10 - Université Pierre & Marie Curie


seminar

Heredity in evolution and evolution of heredity

Olivier RIVOIRE (UJF)

January 27, 2015 at 10 - Collège de France


seminar

Reference models in molecular evolution

Marguerite LAPIERRE (ABI & SMILE)

January 20, 2015 at 10 - Collège de France


seminar

Multiple merger coalescents: Why and what for?

Christophe LEMAIRE (U Angers)

January 13, 2015 at 10 - Collège de France


2012

seminar

Bioinformed design: can we design the microbial ecosystems in our cities to create a healthier, more sustainable world?

Jessica GREEN (U. Oregon)

November 27, 2012 at 10 - Collège de France


seminar

The effects of archipelago spatial structure on the biodiversity patterns predicted by neutral models

Fanny Gascuel (ENS, SMILE)

November 20, 2012 at 10 - Collège de France


seminar

The conventional wisdom redux? Stochastic evolution in multi-strain epidemics

Todd Parsons (SMILE)

November 13, 2012 at 10 - Collège de France


seminar

Branching processes with advantageous mutations

Patrick Hoscheit (SMILE)

October 16, 2012 at 10 - Collège de France


seminar

A microscopic model of species diversification

Marc Manceau (SMILE)

October 10, 2012 at 10 - Collège de France


seminar

Modèles de spéciation/extinction et registre fossile

Gilles Didier (Inst. Math. Luminy)

June 26, 2012 at 10 - Collège de France


seminar

Reconstructing pedigrees using SSR and ISSR data

Richard Pymar (U. Angers)

June 26, 2012 at 10 - Collège de France


seminar

Une nouvelle méthode pour détecter et mesurer la sélection dans les données de polymorphisme génétique

Renaud Vitalis (INRA Montpellier)

June 22, 2012 at 10 - Collège de France


seminar

The infinitely many genes model and the evolution of bacterial genomes under horizontal gene transfer

Franz Baumdicker (U. Freiburg)

June 5, 2012 at 10 - Collège de France


seminar

Théorèmes limites pour un processus de diversification dépendant de son passé

Viet Chi Tran (U. Lille 1)

May 29, 2012 at 10 - Collège de France


seminar

Evolution de séquences d'ADN et systèmes de particules en interaction

Mikael Falconnet (U. Evry)

May 15, 2012 at 10 - Collège de France


seminar

Délimitation d’espèce dans l'inconnu: concepts, méthodes et outils

Nicolas Puillandre (MNHN)

April 10, 2012 at 10 - Collège de France


seminar

Models of adaptive speciation

Michael Kopp (U. Marseille)

March 27, 2012 at 10 - Collège de France


seminar

Transition des systèmes de reproduction chez les plantes, les animaux, les champignons… Quelle histoire (!) ?

Sylvain Billiard (U. Lille 1)

March 20, 2012 at 10 - Collège de France


seminar

Processus de vie et de mort avec mutations à la naissance ou au cours de la vie

Mathieu Richard (UPMC)

March 13, 2012 at 10 - Collège de France


seminar

Approche EDP en dynamique adaptative : concentration et branchement evolutif dans un modele avec plusieurs ressources

Nicolas Champagnat (INRIA Nancy)

March 6, 2012 at 10 - Collège de France


seminar

Bayesian integrative models for molecular and macro-evolutionary studies

Nicolas Lartillot (Montréal)

February 28, 2012 at 10 - Collège de France


seminar

What growth models, tree shape and macroevolution have in common ?

Stephanie Keller-Schmidt (U. Leipzig)

February 21, 2012 at 10 - Collège de France


seminar

Recombinaison à taux dépendant de la divergence entre espèces bactériennes: modèle et statistiques résumées

Pierre Nicolas (INRA)

February 14, 2012 at 10 - Collège de France


seminar

Inferring epidemiological dynamics based on viral sequence data

Tanja Stadler (ETH Zürich)

February 7, 2012 at 10 - Collège de France


seminar

Diversité génétique et mosaïcisme: apport des méthodes de réseau

Philippe Lopez (UPMC)

January 24, 2012 at 10 - Collège de France


seminar

Recherche de motifs de mutations successives répétés au cours de l'évolution

Kader Behdenna (Smile)

January 17, 2012 at 10 - Collège de France


2011

seminar

Adaptive dynamics and macroevolution

Régis FERRIERE (ENS)

December 13, 2011 at 10 - Collège de France


journal club

Joint evolution of substitution rates and continuous phenotypic characters - after Lartillot & Poujol (2010)

Avner BAR-HEN & Mahendra MARIADASSOU (SMILE & INRA)

November 29, 2011 at 10h - Collège de France


seminar

Impact of demographic, cultural and selective processes on genetic diversity: a modelling approach

Frédéric AUSTERLITZ (CNRS)

November 22, 2011 at 10 - Collège de France


journal club

Phylodynamics - after Koelle et al (2010) and Rasmussen et al (2011)

Bernard CAZELLES (UPMC)

November 15, 2011 at 10h - Collège de France


seminar


seminar

Mais au fond qu'est-ce-qu'un test de neutralité ?

Guillaume ACHAZ (UPMC & SMILE)

November 8, 2011 at 10 - Collège de France


seminar

The state of the infection at the time of first detection

Amaury LAMBERT (LPMA & SMILE)

November 8, 2011 - Institut Pasteur


seminar

Phylogenetic comparative analysis: a modelling approach

Aaron KING (U. Michigan)

November 4, 2011 at 10 - Collège de France


seminar

Généalogie du brownien branchant avec sélection

Julien BERESTYCKI (LPMA)

November 3, 2011 at 10 - UPMC


seminar

Probabilistic models of phylogenetic trees

Amaury LAMBERT (LPMA & SMILE)

October 18, 2011 at 10 - Collège de France


seminar

ABGD: Automatic Barcode Gap Discovery

Amaury LAMBERT (LPMA & SMILE)

October 11, 2011 at 10 - Collège de France


1970

seminar

MCEB 2019 - Mathematical and Computational Evolutionary Biology

Prenom Nom (affiliation)

- Porquerolles island